Release History

TODO

  • support cache for downloaded h5ad data

  • rename local_permI to local_permI_L (also global)

  • tentatively: make new adata with LR genes only (if raw exist, other make raw)

Version 0.1.0 (15/04/2023)

  • Minor fix with supporting sparse matrix for adata.X

  • Disabled the output of local permutaiton data in notebook

  • More efficient KNN graph construction, with obsp elements into sparse matrix

  • Added LR data into package

  • Minor fix concat_obj() function

  • Minor updates on notebooks: SpatialDE limited one CPU; diff-test only z-score

  • Suggest adding adata.obsm[‘celltypes’] dataframe to replace adata.obs

Version 0.0.8 (14/03/2023)

  • SpatialDM wrapped into AnnData object, fixed typos

Version 0.0.1 (11/08/2022)

  • Alpha version of SpatialDM released